Well, if you take a look in /etc/X11/xinit/Xclients, you see that the script chooses the preferred desktop according to the value of /etc/sysconfig/desktop. I recommend reading the Xclients scripts to make sure that it understands the options you want, but here's what works on my computers:
| /etc/sysconfig/desktop |
|---|
| KDE |
| GNOME |
| AnotherLevel |
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